Analysing Patterns of Tripeptides Using Statistical Approach and Neural Network Paradigm

Raisa Szabo; Matthew He; Erick Burnham; Jessica Jurani

doi:10.1142/9789812702098_0049

Analysing Patterns of Tripeptides Using Statistical Approach and Neural Network Paradigm

Raisa Szabo
, Matthew He
, Erick Burnham
, Jessica Jurani

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Abstract

The goal of this research was the investigation of the relationships of the distances measured between the different amino acids in the protein of 7,964 tripeptides from the Protein Data Base (PDB). As a first step into this investigation, we developed a program capable of calculating the types of two triangles based on the twelve distances measured between the different amino acids in the protein. The second objective was to use an unsupervised neural network to cluster tripeptides based on the same input data. The selected for this purpose Self-Organizing Maps network was successful in categorizing the data in close approximation to the results achieved by the program.

Original language	American English
Title of host publication	Advances in Bioinformatics and Its Applications
Subtitle of host publication	Proceedings of the International Conference, Nova Southeastern University, Fort Lauderdale, Florida, USA, 16 – 19 December 2004
Editors	Matthew He, Giri Narasimhan, Sergei Petoukhov
Publisher	World Scientific Publishing Company
Pages	544-553
ISBN (Electronic)	978-981-4481-01-4
ISBN (Print)	978-981-256-148-0
DOIs	https://doi.org/10.1142/9789812702098_0049
State	Published - Dec 16 2004
Event	The International Conference on Bioinformatics and Its Application (ICBA) - Fort Lauderdale, United States Duration: Dec 16 2004 → Dec 19 2004

Publication series

Name	Series in Mathematical Biology and Medicine
Volume	8
ISSN (Print)	1793-1258

Conference

Conference	The International Conference on Bioinformatics and Its Application (ICBA)
Country/Territory	United States
City	Fort Lauderdale
Period	12/16/04 → 12/19/04

Keywords

Classification
Codon
Neural Networks
Tripeptides

Disciplines

Mathematics

Access to Document

10.1142/9789812702098_0049

Cite this

Szabo, R., He, M., Burnham, E., & Jurani, J. (2004). Analysing Patterns of Tripeptides Using Statistical Approach and Neural Network Paradigm. In M. He, G. Narasimhan, & S. Petoukhov (Eds.), Advances in Bioinformatics and Its Applications: Proceedings of the International Conference, Nova Southeastern University, Fort Lauderdale, Florida, USA, 16 – 19 December 2004 (pp. 544-553). (Series in Mathematical Biology and Medicine; Vol. 8). World Scientific Publishing Company. https://doi.org/10.1142/9789812702098_0049

Analysing Patterns of Tripeptides Using Statistical Approach and Neural Network Paradigm. / Szabo, Raisa; He, Matthew; Burnham, Erick et al.
Advances in Bioinformatics and Its Applications: Proceedings of the International Conference, Nova Southeastern University, Fort Lauderdale, Florida, USA, 16 – 19 December 2004. ed. / Matthew He; Giri Narasimhan; Sergei Petoukhov. World Scientific Publishing Company, 2004. p. 544-553 (Series in Mathematical Biology and Medicine; Vol. 8).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Szabo, R, He, M, Burnham, E & Jurani, J 2004, Analysing Patterns of Tripeptides Using Statistical Approach and Neural Network Paradigm. in M He, G Narasimhan & S Petoukhov (eds), Advances in Bioinformatics and Its Applications: Proceedings of the International Conference, Nova Southeastern University, Fort Lauderdale, Florida, USA, 16 – 19 December 2004. Series in Mathematical Biology and Medicine, vol. 8, World Scientific Publishing Company, pp. 544-553, The International Conference on Bioinformatics and Its Application (ICBA), Fort Lauderdale, Florida, United States, 12/16/04. https://doi.org/10.1142/9789812702098_0049

Szabo R, He M, Burnham E, Jurani J. Analysing Patterns of Tripeptides Using Statistical Approach and Neural Network Paradigm. In He M, Narasimhan G, Petoukhov S, editors, Advances in Bioinformatics and Its Applications: Proceedings of the International Conference, Nova Southeastern University, Fort Lauderdale, Florida, USA, 16 – 19 December 2004. World Scientific Publishing Company. 2004. p. 544-553. (Series in Mathematical Biology and Medicine). doi: 10.1142/9789812702098_0049

Szabo, Raisa ; He, Matthew ; Burnham, Erick et al. / Analysing Patterns of Tripeptides Using Statistical Approach and Neural Network Paradigm. Advances in Bioinformatics and Its Applications: Proceedings of the International Conference, Nova Southeastern University, Fort Lauderdale, Florida, USA, 16 – 19 December 2004. editor / Matthew He ; Giri Narasimhan ; Sergei Petoukhov. World Scientific Publishing Company, 2004. pp. 544-553 (Series in Mathematical Biology and Medicine).

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KW - Codon

KW - Neural Networks

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UR - https://nsuworks.nova.edu/cnso_math_facpres/362

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BT - Advances in Bioinformatics and Its Applications

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ER -

Analysing Patterns of Tripeptides Using Statistical Approach and Neural Network Paradigm

Abstract

Publication series

Conference

Keywords

Disciplines

Access to Document

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