The genome sequence of a heart cockle, Fragum fragum (Linnaeus, 1758)

Ruiqi Li; Jingchun Li; Sarah Lemer; Jose Victor Lopez; Graeme Oatley; Isabelle Ailish Clayton-Lucey; Elizabeth Sinclair; Eerik Aunin; Noah Gettle; Camilla Santos; Michael Paulini; Haoyu Niu; Victoria McKenna; Rebecca O’Brien

doi:10.12688/wellcomeopenres.21134.1

The genome sequence of a heart cockle, Fragum fragum (Linnaeus, 1758)

Ruiqi Li
, Jingchun Li
, Sarah Lemer
, Jose Victor Lopez
, Graeme Oatley
, Isabelle Ailish Clayton-Lucey
, Elizabeth Sinclair
, Eerik Aunin
, Noah Gettle
, Camilla Santos
, Michael Paulini
, Haoyu Niu
, Victoria McKenna
, Rebecca O’Brien

Research output: Contribution to journal › Article › peer-review

1 Scopus citations

Abstract

We present a genome assembly from an individual specimen of Fragum fragum (a heart cockle; Mollusca; Bivalvia; Veneroida; Cardiidae). The genome sequence is 1,153.1 megabases in span. Most of the assembly is scaffolded into 19 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 22.36 kilobases in length. Gene annotation of this assembly on Ensembl identified 17,262 protein coding genes.

Original language	English
Article number	129
Journal	Wellcome Open Research
Volume	9
DOIs	https://doi.org/10.12688/wellcomeopenres.21134.1
State	Published - 2024

Bibliographical note

Publisher Copyright:
Copyright: © 2024 Li R et al.

ASJC Scopus Subject Areas

Medicine (miscellaneous)
General Biochemistry,Genetics and Molecular Biology

Keywords

chromosomal
Fragum fragum
genome sequence
heart cockle
Veneroida

Disciplines

Life Sciences
Biology

Access to Document

10.12688/wellcomeopenres.21134.1License: CC BY

Cite this

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title = "The genome sequence of a heart cockle, Fragum fragum (Linnaeus, 1758)",

abstract = "We present a genome assembly from an individual specimen of Fragum fragum (a heart cockle; Mollusca; Bivalvia; Veneroida; Cardiidae). The genome sequence is 1,153.1 megabases in span. Most of the assembly is scaffolded into 19 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 22.36 kilobases in length. Gene annotation of this assembly on Ensembl identified 17,262 protein coding genes. ",

keywords = "chromosomal, Fragum fragum, genome sequence, heart cockle, Veneroida",

author = "Ruiqi Li and Jingchun Li and Sarah Lemer and Lopez, \{Jose Victor\} and Graeme Oatley and Clayton-Lucey, \{Isabelle Ailish\} and Elizabeth Sinclair and Eerik Aunin and Noah Gettle and Camilla Santos and Michael Paulini and Haoyu Niu and Victoria McKenna and Rebecca O{\textquoteright}Brien",

note = "Publisher Copyright: Copyright: {\textcopyright} 2024 Li R et al.",

year = "2024",

doi = "10.12688/wellcomeopenres.21134.1",

language = "English",

volume = "9",

journal = "Wellcome Open Research",

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T1 - The genome sequence of a heart cockle, Fragum fragum (Linnaeus, 1758)

AU - Li, Ruiqi

AU - Li, Jingchun

AU - Lemer, Sarah

AU - Lopez, Jose Victor

AU - Oatley, Graeme

AU - Clayton-Lucey, Isabelle Ailish

AU - Sinclair, Elizabeth

AU - Aunin, Eerik

AU - Gettle, Noah

AU - Santos, Camilla

AU - Paulini, Michael

AU - Niu, Haoyu

AU - McKenna, Victoria

AU - O’Brien, Rebecca

PY - 2024

Y1 - 2024

N2 - We present a genome assembly from an individual specimen of Fragum fragum (a heart cockle; Mollusca; Bivalvia; Veneroida; Cardiidae). The genome sequence is 1,153.1 megabases in span. Most of the assembly is scaffolded into 19 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 22.36 kilobases in length. Gene annotation of this assembly on Ensembl identified 17,262 protein coding genes.

AB - We present a genome assembly from an individual specimen of Fragum fragum (a heart cockle; Mollusca; Bivalvia; Veneroida; Cardiidae). The genome sequence is 1,153.1 megabases in span. Most of the assembly is scaffolded into 19 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 22.36 kilobases in length. Gene annotation of this assembly on Ensembl identified 17,262 protein coding genes.

KW - chromosomal

KW - Fragum fragum

KW - genome sequence

KW - heart cockle

KW - Veneroida

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DO - 10.12688/wellcomeopenres.21134.1

M3 - Article

C2 - 38989474

AN - SCOPUS:85198272414

SN - 2398-502X

VL - 9

JO - Wellcome Open Research

JF - Wellcome Open Research

M1 - 129

ER -

The genome sequence of a heart cockle, Fragum fragum (Linnaeus, 1758)

Abstract

Bibliographical note

ASJC Scopus Subject Areas

Keywords

Disciplines

Access to Document

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