The genome sequence of the heart cockle, Fragum sueziense (Issel, 1869)

Wellcome Sanger Institute Scientific Operations: Sequencing Operations; Wellcome Sanger Institute Tree of Life Core Informatics Team; EBI Aquatic Symbiosis Genomics Data Portal Team; Aquatic Symbiosis Genomics Project Leadership; Wellcome Sanger Institute Tree of Life Management, Samples and Laboratory Team

doi:10.12688/wellcomeopenres.22585.1

The genome sequence of the heart cockle, Fragum sueziense (Issel, 1869)

Wellcome Sanger Institute Scientific Operations: Sequencing Operations
, Wellcome Sanger Institute Tree of Life Core Informatics Team
, EBI Aquatic Symbiosis Genomics Data Portal Team
, Aquatic Symbiosis Genomics Project Leadership
, Wellcome Sanger Institute Tree of Life Management, Samples and Laboratory Team

Research output: Contribution to journal › Article › peer-review

Abstract

We present a genome assembly from an individual Fragum sueziense (the heart cockle; Mollusca; Bivalvia; Cardiida; Cardiidae). The genome sequence is 1,206.1 megabases in span. Most of the assembly is scaffolded into 19 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 92.77 kilobases in length. Gene annotation of this assembly on Ensembl identified 70,309 protein-coding genes.

Original language	English
Article number	366
Journal	Wellcome Open Research
Volume	9
DOIs	https://doi.org/10.12688/wellcomeopenres.22585.1
State	Published - 2024

Bibliographical note

Publisher Copyright:
Copyright: © 2024 Li R et al.

ASJC Scopus Subject Areas

Medicine (miscellaneous)
General Biochemistry,Genetics and Molecular Biology

Keywords

Cardiida; Fraginae
chromosomal
Fragum sueziense
genome sequence
heart cockle

Access to Document

10.12688/wellcomeopenres.22585.1License: CC BY

Cite this

Wellcome Sanger Institute Scientific Operations: Sequencing Operations, Wellcome Sanger Institute Tree of Life Core Informatics Team, EBI Aquatic Symbiosis Genomics Data Portal Team, Aquatic Symbiosis Genomics Project Leadership, & Wellcome Sanger Institute Tree of Life Management, Samples and Laboratory Team (2024). The genome sequence of the heart cockle, Fragum sueziense (Issel, 1869). Wellcome Open Research, 9, Article 366. https://doi.org/10.12688/wellcomeopenres.22585.1

The genome sequence of the heart cockle, Fragum sueziense (Issel, 1869). / Wellcome Sanger Institute Scientific Operations: Sequencing Operations; Wellcome Sanger Institute Tree of Life Core Informatics Team; EBI Aquatic Symbiosis Genomics Data Portal Team et al.
In: Wellcome Open Research, Vol. 9, 366, 2024.

Research output: Contribution to journal › Article › peer-review

Wellcome Sanger Institute Scientific Operations: Sequencing Operations, Wellcome Sanger Institute Tree of Life Core Informatics Team, EBI Aquatic Symbiosis Genomics Data Portal Team, Aquatic Symbiosis Genomics Project Leadership & Wellcome Sanger Institute Tree of Life Management, Samples and Laboratory Team 2024, 'The genome sequence of the heart cockle, Fragum sueziense (Issel, 1869)', Wellcome Open Research, vol. 9, 366. https://doi.org/10.12688/wellcomeopenres.22585.1

Wellcome Sanger Institute Scientific Operations: Sequencing Operations, Wellcome Sanger Institute Tree of Life Core Informatics Team, EBI Aquatic Symbiosis Genomics Data Portal Team, Aquatic Symbiosis Genomics Project Leadership, Wellcome Sanger Institute Tree of Life Management, Samples and Laboratory Team. The genome sequence of the heart cockle, Fragum sueziense (Issel, 1869). Wellcome Open Research. 2024;9:366. doi: 10.12688/wellcomeopenres.22585.1

@article{0a9600853c1f4dc1b036cc8a1cfdaca7,

title = "The genome sequence of the heart cockle, Fragum sueziense (Issel, 1869)",

abstract = "We present a genome assembly from an individual Fragum sueziense (the heart cockle; Mollusca; Bivalvia; Cardiida; Cardiidae). The genome sequence is 1,206.1 megabases in span. Most of the assembly is scaffolded into 19 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 92.77 kilobases in length. Gene annotation of this assembly on Ensembl identified 70,309 protein-coding genes. ",

keywords = "Cardiida; Fraginae, chromosomal, Fragum sueziense, genome sequence, heart cockle",

author = "\{Wellcome Sanger Institute Scientific Operations: Sequencing Operations\} and \{Wellcome Sanger Institute Tree of Life Core Informatics Team\} and \{EBI Aquatic Symbiosis Genomics Data Portal Team\} and \{Aquatic Symbiosis Genomics Project Leadership\} and \{Wellcome Sanger Institute Tree of Life Management, Samples and Laboratory Team\} and Ruiqi Li and Jingchun Li and Sarah Lemer and Lopez, \{Jose Victor\} and Graeme Oatley and Elizabeth Sinclair and Clayton-Lucey, \{Isabelle Ailish\} and Eerik Aunin and Noah Gettle and Camilla Santos and Michael Paulini and Haoyu Niu and Victoria McKenna and Rebecca O{\textquoteright}Brien",

note = "Publisher Copyright: Copyright: {\textcopyright} 2024 Li R et al.",

year = "2024",

doi = "10.12688/wellcomeopenres.22585.1",

language = "English",

volume = "9",

journal = "Wellcome Open Research",

issn = "2398-502X",

publisher = "F1000 Research Ltd",

}

TY - JOUR

T1 - The genome sequence of the heart cockle, Fragum sueziense (Issel, 1869)

AU - Wellcome Sanger Institute Scientific Operations: Sequencing Operations

AU - Wellcome Sanger Institute Tree of Life Core Informatics Team

AU - EBI Aquatic Symbiosis Genomics Data Portal Team

AU - Aquatic Symbiosis Genomics Project Leadership

AU - Wellcome Sanger Institute Tree of Life Management, Samples and Laboratory Team

AU - Li, Ruiqi

AU - Li, Jingchun

AU - Lemer, Sarah

AU - Lopez, Jose Victor

AU - Oatley, Graeme

AU - Sinclair, Elizabeth

AU - Clayton-Lucey, Isabelle Ailish

AU - Aunin, Eerik

AU - Gettle, Noah

AU - Santos, Camilla

AU - Paulini, Michael

AU - Niu, Haoyu

AU - McKenna, Victoria

AU - O’Brien, Rebecca

PY - 2024

Y1 - 2024

N2 - We present a genome assembly from an individual Fragum sueziense (the heart cockle; Mollusca; Bivalvia; Cardiida; Cardiidae). The genome sequence is 1,206.1 megabases in span. Most of the assembly is scaffolded into 19 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 92.77 kilobases in length. Gene annotation of this assembly on Ensembl identified 70,309 protein-coding genes.

AB - We present a genome assembly from an individual Fragum sueziense (the heart cockle; Mollusca; Bivalvia; Cardiida; Cardiidae). The genome sequence is 1,206.1 megabases in span. Most of the assembly is scaffolded into 19 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 92.77 kilobases in length. Gene annotation of this assembly on Ensembl identified 70,309 protein-coding genes.

KW - Cardiida; Fraginae

KW - chromosomal

KW - Fragum sueziense

KW - genome sequence

KW - heart cockle

UR - https://www.scopus.com/pages/publications/85206270007

UR - https://www.scopus.com/pages/publications/85206270007#tab=citedBy

U2 - 10.12688/wellcomeopenres.22585.1

DO - 10.12688/wellcomeopenres.22585.1

M3 - Article

C2 - 39398938

AN - SCOPUS:85206270007

SN - 2398-502X

VL - 9

JO - Wellcome Open Research

JF - Wellcome Open Research

M1 - 366

ER -

The genome sequence of the heart cockle, Fragum sueziense (Issel, 1869)

Abstract

Bibliographical note

ASJC Scopus Subject Areas

Keywords

Access to Document

Other files and links

Fingerprint

Cite this