Triply stochastic cubes associated with genetic code numerical mappings

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Abstract

Knowledge about genetic coding systems are useful for computer science, engineering and education. In this paper we derive triply stochastic cubes associated with the triplet genetic code numerical mappings. We also demonstrate the symmetrical patterns between the entries of the cubes and DNA molar concentration accumulation via an arithmetic sequence. The stochastic cubes based on genetic code were derived by using three kinds of chemically determined equivalences. We have shown that at each stage (Nth step) of matrix evolution, hydrogen bonds expansion is triply stochastic and its accumulation is governed by an arithmetic sequence with a common difference of total number of hydrogen bonds of 5N; the pyrimidines/purines ring expansion is triply stochastic and its accumulation is governed by an arithmetic sequence with a common difference of total number of rings of 3N; and the amino-mutating absence/present expansion is also triply stochastic and its accumulation is governed by an arithmetic sequence with a common difference of total number of amino-mutating of 1N. Data about the genetic stochastic matrices/cubes associated with the genetic codes can lead to new understanding of genetic code systems, to new effective algorithms of information processing which has a perspective to be applied for modeling mutual communication among different parts of the genetic ensemble.

Original languageEnglish
Title of host publicationAdvances in Computer Science for Engineering and Education
EditorsZhengbing Hu, Ivan Dychka, Matthew He, Sergey Petoukhov
PublisherSpringer Verlag
Pages601-616
Number of pages16
ISBN (Print)9783319910079
DOIs
StatePublished - 2019
Event1st International Conference on Computer Science, Engineering and Education Applications, ICCSEEA2018 - Kiev, Ukraine
Duration: Jan 18 2018Jan 20 2018

Publication series

NameAdvances in Intelligent Systems and Computing
Volume754
ISSN (Print)2194-5357

Conference

Conference1st International Conference on Computer Science, Engineering and Education Applications, ICCSEEA2018
Country/TerritoryUkraine
CityKiev
Period1/18/181/20/18

Bibliographical note

Publisher Copyright:
© Springer International Publishing AG, part of Springer Nature 2019.

ASJC Scopus Subject Areas

  • Control and Systems Engineering
  • General Computer Science

Keywords

  • Arithmetic sequence
  • DNA numerical mapping
  • Genetic code equivalence
  • Triply stochastic cubes

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